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Structural alignment
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#	Item
11	Protein Structure Alignment Using a Graph Matching Technique Tatsuya Akutsu Department of Computer Science, Gunma University Add to Reading List Source URL: www.jsbi.org Language: English - Date: 1998-01-09 02:50:07 Bioinformatics Mathematics Statistics Computational phylogenetics Graph theory Root-mean-square deviation of atomic positions Dynamic programming Matching Bipartite graph Root-mean-square deviation Algorithm Structural alignment software
12	August 4, :42 WSPC - Proceedings Trim Size: 9.75in x 6.5in Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2008-12-11 03:42:57 Computational phylogenetics Bioinformatics Biology Mathematical and theoretical biology Sequence alignment Multiple sequence alignment Structural alignment BLAST FASTA ESyPred3D HH-suite
13	Microsoft Word - 66_Murga.doc Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2007-09-20 02:18:17 Bioinformatics Biology Protein methods Chemistry Statistics Proteomics Mary Jo Ondrechen Root-mean-square deviation Protein Sequence alignment Structural alignment
14	Microsoft Word - 26-Guerler.doc Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2009-11-08 23:13:12 Bioinformatics Biology Protein methods Protein structure Structural biology Computational phylogenetics Mathematical and theoretical biology STING BLAST Structural alignment Protein contact map Protein family
15	Detecting common amino acid sequence patterns with a gap Mikita Suyama Takaaki Nishioka Add to Reading List Source URL: www.jsbi.org Language: English - Date: 1998-01-09 02:50:02 Bioinformatics Biology Mathematical and theoretical biology Sequence motif Structural biology PROSITE Consensus sequence Multiple sequence alignment Sequence alignment
16	Genome Informatics 15(1): 213–ELISA: A Unified, Multidimensional View of the Protein Domain Universe Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2004-05-18 04:42:32 Biology Bioinformatics Biological databases Structural biology Protein structure Computational phylogenetics Protein domains Superfamily database Phylogenetic tree Protein superfamily BLAST Sequence alignment
17	Accuracy of multiple sequence alignments as assessed by reference to structural alignments O. Gotoh Department of Biochemistry, Saitama Cancer Center Research Institute Add to Reading List Source URL: www.jsbi.org Language: English - Date: 1998-01-09 02:50:17 Bioinformatics Computational phylogenetics Multiple sequence alignment Sequence alignment Structural alignment Protein family Alignment T-Coffee
18	Bioinformatics Advance Access published April 28, 2010 Parallelization of the MAFFT multiple sequence alignment program Kazutaka Katoh∗ and Hiroyuki Toh Computational Biology Research Center, National Institute of Adv Add to Reading List Source URL: bioinformatics.oxfordjournals.org Language: English Computational phylogenetics Bioinformatics Biology Mathematical and theoretical biology Software Multiple sequence alignment MAFFT BLAST Sequence alignment Clustal Structural alignment Alignment
19	Pure Appl. Chem., Vol. 74, No. 6, pp. 907–914, 2002. © 2002 IUPAC Modeling genome structure and function* Ram Samudrala Department of Microbiology, University of Washington, Seattle, WA, Add to Reading List Source URL: www.ram.org Language: English - Date: 2015-04-27 23:14:33 Protein structure Science Chemistry Structural genomics Protein structure prediction De novo protein structure prediction Homology modeling Structural alignment Threading Bioinformatics Biology Protein methods
20	Thoroughly sampling sequence space: Large-scale protein design of structural ensembles STEFAN M. LARSON,1 JEREMY L. ENGLAND,2 JOHN R. DESJARLAIS,3 VIJAY S. PANDE1 AND Add to Reading List Source URL: www.englandlab.com Language: English - Date: 2011-07-05 13:37:49 Science Chemistry Sequence alignment Threading Protein structure prediction Protein design Protein domain Conformational entropy BLAST Protein structure Biology Bioinformatics

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